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SRX21613536: Meiomeniidae sp. Panama transcriptome
1 ILLUMINA (Illumina NovaSeq 6000) run: 67.8M spots, 20.5G bases, 6.6Gb downloads

Design: Complimentary DNA was synthesized directly from whole animals with the Takara SMART-Seq HT kit. A sequencing library was prepared with the Illumina Nextera XT kit with dual indexing. Sequencing was performed at Psomagen (Cambridge, MA) on a NovaSeq S4 flowcell with 2X150 bp reads.
Submitted by: The University of Alabama
Study: Meiofaunal solenogaster transcriptomes
show Abstracthide Abstract
Body size is a fundamental characteristic of animals that impacts every aspect of their biology from anatomical complexity to ecology. In Mollusca, Solenogastres has been considered important to understanding the group's early evolution as most morphology-based phylogenetic reconstructions placed it as an early branching molluscan lineage. Under this scenario, molluscs were thought to have evolved from a small, turbellarian-like ancestor and small body size was inferred to be plesiomorphic for Solenogastres. More recently, phylogenomic studies have shown that aplacophorans form a clade with chitons, which is sister to all other molluscs, suggesting a relatively large-bodied ancestor for Mollusca. Meanwhile, recent investigations into aplacophoran phylogeny have called the assumption that the last common ancestor of Solenogastres was small-bodied into question, but sampling of meiofaunal species was limited, biasing these studies towards large-bodied taxa and leaving fundamental questions about solenogaster body size evolution unanswered. Here, we supplemented available data with transcriptomes from seven diverse meiofaunal species of Solenogastres and conducted phylogenomic analyses on datasets of up to 949 genes. Maximum likelihood analyses support the small-bodied family Meiomeniidae as the sister group to all other solenogasters, congruent with early ideas of a small-bodied ancestor of Solenogastres. In contrast, Bayesian Inference supports the large-bodied family Amphimeniidae as the sister group to all other solenogasters. In light of these results, we performed ancestral character state reconstruction to explore the implications of both hypotheses on understanding of Solenogaster evolution and review previous hypotheses about body size evolution and its potential consequences on solenogaster biology. Although some questions remain, we show that body size evolution has been highly dynamic over the course of solenogaster evolution, making this group an interesting system to address questions about the evolutionary consequences of miniaturization.
Sample: Meiomeniidae sp. Panama transcriptome
SAMN37261692 • SRS18786056 • All experiments • All runs
Organism: Meiomeniidae
Library:
Name: Meiomeniidae sp. Bocas
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 67.8M spots, 20.5G bases, 6.6Gb
Run# of Spots# of BasesSizePublished
SRR2589318267,825,02920.5G6.6Gb2023-09-03

ID:
29243602

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